PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Home  BLAST  Prediction  RegMap  ATRM  Download  Help  About  Links
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016457326.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 278aa    MW: 31247.7 Da    PI: 8.4626
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016457326.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00065216238223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +Cp C+ +Fs+   L  H ++ H
  XP_016457326.1 216 QCPQCHLRFSTIKALIDHVQKiH 238
                     7*****************99988 PP
2zf-C2H215.45.2e-05250272223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +Cp C+k F+++  L+ H  + H
  XP_016457326.1 250 VCPRCSKGFRDPVALVEHVEReH 272
                     7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183102.22E-11459No hitNo description
PROSITE profilePS510397.9011055IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.103.6E-101153IPR000058Zinc finger, AN1-type
SMARTSM001540.00621352IPR000058Zinc finger, AN1-type
PfamPF014283.4E-121351IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.2E-1091145IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.96E-993147No hitNo description
PROSITE profilePS510397.9798145IPR000058Zinc finger, AN1-type
SMARTSM001540.0042101142IPR000058Zinc finger, AN1-type
PfamPF014283.0E-8101141IPR000058Zinc finger, AN1-type
SMARTSM003550.022215238IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280217238IPR007087Zinc finger, C2H2
PROSITE profilePS501579.016249277IPR007087Zinc finger, C2H2
SMARTSM003557.1249272IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280251272IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGTPVFPNLG KHCSVEDCRL IDFLPFTCDC CHKVFCLEHR SYNRHECPTA NKNNVTVVIC  60
PLCAKGVRLI PDEDPNITWG SHVNTECDPS NYEKATKKKK CPVPRCRELL TFSNTIKCRD  120
CTVDHCLKHR FGPDHNCPGP KKPEPAFPFM NFLNGSKEEP KKPQSTSSSR WTTSLFKVVS  180
SVKEKLSSEF STTQQTGQSS RFTSHSGANT SSQVEQCPQC HLRFSTIKAL IDHVQKIHEK  240
NGVMNLTVDV CPRCSKGFRD PVALVEHVER EHKGTSKA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009789126.10.0PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 13-like
RefseqXP_016457326.10.0PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 13-like
SwissprotQ8VZ421e-117SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLM1CLM51e-177M1CLM5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000700441e-177(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53112237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-116C2H2 family protein